PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01654-abinit-gene-0.5-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ZF-HD
Protein Properties Length: 293aa    MW: 32214.4 Da    PI: 8.6438
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01654-abinit-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.81.1e-3264119458
                                           ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                                                           v YkeClkNhAa++Gg a+DGCgEf+ps++++ +++++lkCaACgCHRnFHRr+++
  augustus_masked-scaffold01654-abinit-gene-0.5-mRNA-1  64 VSYKECLKNHAATMGGLALDGCGEFLPSPNATpSDPTSLKCAACGCHRNFHRRDTD 119
                                                           79*****************************99********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-2164117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.5E-2764118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.6E-2966117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.01266117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.2E-27180252IPR009057Homeodomain-like
SuperFamilySSF466891.93E-18180251IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-26190246IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDFNPTTPTS PTPDTDAETP PQTQPFKSLS FTNGSLKRHH PLPLPPPTQP QPKPKPQQEP  60
PMLVSYKECL KNHAATMGGL ALDGCGEFLP SPNATPSDPT SLKCAACGCH RNFHRRDTDT  120
VPKVFNFHQQ LKLSSPSSSP STSPSPVRSP PPVSHLPPSQ YYYSSASSLP QMLLSLSAAA  180
EPSSENPLGK KRFRSKFTQE QKEKMFEFSE KLGWTMQKCN DGLVEEFCHE VGIDRKVLRV  240
WMHNNKSTLR KKEMGLLGHH STVSDGTAAF CCKKEIDYSV NVHVSANGSS PSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-221912481875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895093.14e-79PREDICTED: zinc-finger homeodomain protein 11-like
TrEMBLA0A067KYG42e-73A0A067KYG4_JATCU; Uncharacterized protein
STRINGVIT_14s0108g00750.t017e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.13e-50homeobox protein 30